PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0069s0280.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 417aa    MW: 45461.1 Da    PI: 6.8733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0069s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1858107255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  SapurV1A.0069s0280.1.p  58 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAALAMRG 107
                             59*******.**********93....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-2958114IPR001471AP2/ERF domain
PROSITE profilePS5103222.70858115IPR001471AP2/ERF domain
PfamPF008471.0E-1158107IPR001471AP2/ERF domain
SMARTSM003801.6E-3358121IPR001471AP2/ERF domain
CDDcd000182.97E-3058114No hitNo description
SuperFamilySSF541712.55E-2158115IPR016177DNA-binding domain
PRINTSPR003672.5E-95970IPR001471AP2/ERF domain
PRINTSPR003672.5E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEEALRRLDG IPSHTLETSL HEPTIADLQK RSALTSTACT ATNKRALKES GGTGGNMRYR  60
GVRRRPWGRY AAEIRDPQSK ERRWLGTFDT AEEAACAYDY AALAMRGLKA RTNFVYPDAH  120
SATADPAHNL IPPFTNSKSS YLPSRHHNIP SSNSSLGHLH VGDFSAGGSA TQRSTSDSIA  180
STSLNMLFLR DFIHSSSGSS SHNHPQPFSD RYPCIEGSSN SDPVNFPGGS SVNPSSNTIS  240
SSFNISLADS AVTTLPHMEF HQNYTTLGDP KRADAKAEEL EFFPQEPSDS GLLQEIIQGF  300
FPKHSPDKIA SSESSGESIA APTSETIPLN QSLDGSRSGM KKYFGKNEHH DPYLGRQGRR  360
SGQLIEGSYS GVSSRELPHC NEMALINRQM GPDSILDDIF QYPDRMSAFA ARFQNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1859114359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1170910.0JX117091.1 Populus angustifolia isolate ABOR2 clone b ERF61 (ERF61) gene, complete cds.
GenBankJX1172230.0JX117223.1 Populus angustifolia isolate UTOC1 clone b ERF61 (ERF61) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311764.20.0AP2 domain-containing transcription factor family protein
TrEMBLR4ISQ50.0R4ISQ5_9R
STRINGPOPTR_0008s19030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-14DORNROSCHEN-like